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Gut Analysis ToolBox - Documentation
  • Home
  • 🚀1. Choosing the right parameters
  • 🔢2. Cell counts and ganglia analysis
    • 📄Batch Analysis
  • 🗺️3. Spatial Analysis
  • 💻4. Analyzing the Results
  • 🌋5. Segmentation options
  • 🚅6. QuPath for analysing ENS
  • 🧮7. Multiplex
    • Multiplex image alignment
    • Multiplex analysis using GAT
    • Multiplex analysis using QuPath
    • Other resources
  • 🔬8. Calcium Imaging Analysis
    • Image alignment/registration
    • Extracting calcium traces
    • Other Resources
  • System Requirements
  • Analysis tools & workflows of interest
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8. Calcium Imaging Analysis

Analyzing calcium imaging data of the ENS

PreviousOther resourcesNextImage alignment/registration

Last updated 1 year ago

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The calcium imaging analysis scripts in GAT allow you to:

  • Register or align your images if there is a lot of movement or contractions

  • Define regions of interest and extract traces normalized to baseline

Example of image alignment

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Image alignment/registration
Extracting calcium traces
Raw data with movement
Aligned data