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Gut Analysis ToolBox - Documentation
  • Home
  • 🚀1. Choosing the right parameters
  • 🔢2. Cell counts and ganglia analysis
    • 📄Batch Analysis
  • 🗺️3. Spatial Analysis
  • 💻4. Analyzing the Results
  • 🌋5. Segmentation options
  • 🚅6. QuPath for analysing ENS
  • 🧮7. Multiplex
    • Multiplex image alignment
    • Multiplex analysis using GAT
    • Multiplex analysis using QuPath
    • Other resources
  • 🔬8. Calcium Imaging Analysis
    • Image alignment/registration
    • Extracting calcium traces
    • Other Resources
  • System Requirements
  • Analysis tools & workflows of interest
  • Contributing to GAT
  • Troubleshooting
    • List of major bugs fixed
  • Citing GAT
  • Citations
  • Features
  • Feedback
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Citing GAT

How to cite GAT!

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Last updated 1 month ago

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To cite the software, please use the following paper:

Luke Sorensen, Adam Humenick, Sabrina S. B. Poon, Myat Noe Han, Narges S. Mahdavian, Matthew C. Rowe, Ryan Hamnett, Estibaliz Gómez-de-Mariscal, Peter H. Neckel, Ayame Saito, Keith Mutunduwe, Christie Glennan, Robert Haase, Rachel M. McQuade, Jaime P. P. Foong, Simon J. H. Brookes, Julia A. Kaltschmidt, Arrate Muñoz-Barrutia, Sebastian K. King, Nicholas A. Veldhuis, Simona E. Carbone, Daniel P. Poole, Pradeep Rajasekhar; Gut Analysis Toolbox: Automating quantitative analysis of enteric neurons. J Cell Sci 2024; jcs.261950. doi:

Please cite the above paper if you use our software. It is important to recognize research software as an important research tool. This is helpful in showcasing how important it is to the community and also get funding to maintain it.

https://doi.org/10.1242/jcs.261950