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Gut Analysis ToolBox - Documentation
  • Home
  • 🚀1. Choosing the right parameters
  • 🔢2. Cell counts and ganglia analysis
    • 📄Batch Analysis
  • 🗺️3. Spatial Analysis
  • 💻4. Analyzing the Results
  • 🌋5. Segmentation options
  • 🚅6. QuPath for analysing ENS
  • 🧮7. Multiplex
    • Multiplex image alignment
    • Multiplex analysis
    • Other resources
  • 🔬8. Calcium Imaging Analysis
    • Image alignment/registration
    • Extracting calcium traces
    • Other Resources
  • System Requirements
  • Analysis tools & workflows of interest
  • Contributing to GAT
  • Troubleshooting
    • List of major bugs fixed
  • Citing GAT
  • Citations
  • Features
  • Feedback
  • Benchmarks
    • Ganglia Models
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  1. 🧮7. Multiplex

Multiplex analysis

There are two options:

  1. Use GAT: The analysis will follow the same workflow as multichannel neuron analysis as mentioned here. You will have to enter the neuron channel names and numbers at the start of each analysis.

  2. Use QuPath: An alternative is to use QuPath for the analysis in combination with the GAT models for segmenting the neurons.

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Last updated 1 month ago

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