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Gut Analysis ToolBox - Documentation
  • Home
  • 🚀1. Choosing the right parameters
  • 🔢2. Cell counts and ganglia analysis
    • 📄Batch Analysis
  • 🗺️3. Spatial Analysis
  • 💻4. Analyzing the Results
  • 🌋5. Segmentation options
  • 🚅6. QuPath for analysing ENS
  • 🧮7. Multiplex
    • Multiplex image alignment
    • Multiplex analysis using GAT
    • Multiplex analysis using QuPath
    • Other resources
  • 🔬8. Calcium Imaging Analysis
    • Image alignment/registration
    • Extracting calcium traces
    • Other Resources
  • System Requirements
  • Analysis tools & workflows of interest
  • Contributing to GAT
  • Troubleshooting
    • List of major bugs fixed
  • Citing GAT
  • Citations
  • Features
  • Feedback
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  1. 7. Multiplex

Other resources

There are plenty of resources that allow image alignment for multiplexing.

  • A comprehensive collection of methods and software can be found here: https://www.tissue-atlas.org/software. Of particular note is ASHLAR for image registration and stitching.

PreviousMultiplex analysis using QuPathNext8. Calcium Imaging Analysis

Last updated 1 year ago

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